Try Galaxy: http://galaxy.psu.edu/
> Dear Hiram, > > Thanks, but these two option will not work for me: > 1) I need an automatic way to perform the query > 2) I need a join of the SNPs table with some other annotations tables. > > Is there any alternative? > Thanks, > Hani > > -------------------------------------- > Hani Neuvirth-Telem > Machine Learning and Data Mining Group > IBM Research Lab, Israel > Phone: 972-3-7689-404 > E-mail: [email protected] > > > > From: > Hiram Clawson <[email protected]> > To: > Hani Neuvirth-Telem/Haifa/i...@ibmil > Cc: > [email protected], Ariel Farkash/Haifa/i...@ibmil > Date: > 23/12/2009 23:56 > Subject: > Re: [Genome] extracting data for ~1M SNPs > > > > Good Afternoon Hani: > > You may be able to do your query with the table browser: > http://genome.ucsc.edu/cgi-bin/hgTables?db=hg18 > > Select: group "Variation and Repeats" track: SNPs (130) > > Or perhaps download the actual SNP file: > http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/snp130.txt.gz > > and fetch your information from that file. > > --Hiram > > Hani Neuvirth-Telem wrote: >> Hello, >> >> We would like to downloading from the UCSC database some data for ~1M >> SNPs. >> In your web site you ask not to perform heavy queries through the MySQL >> server. >> What is the recommended way to perform such queries? >> (Web-sevice/JDBC)? >> >> Thank you, >> Hani > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
