UCSC,
I wish to attempt to batch automate the re-alignment of SNP flanking
sequences to the genomic sequence similar to the way that you do on your
website and I have two questions. I already have the list of rs numbers that
correspond to all of the SNP's that I wish to use, but in the alignment I
only want the sequence around the SNP that has no mismatches with the
genomic sequence.
1) Where can I batch download the dbSNP flanking sequences?
2) Where can I download the corresponding genomic sequence?
3) How would you recommend I go about this re-alignment (i.e. what
program/general procedure)
Thank you for your assistance.
Kyle Tretina
Wheaton College
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Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
