Hello, We are unable to duplicate (in either hg18 or hg19).
Double check that all white space delimiters are "spaces or tabs" and not returns (hard or soft). In particular, make certain the track line is a contiguous string (same line) as a split line often results in the error you sent. Another problem is that you are using a different database and that the chromosomes either are not in that database, the coordinates fall outside of the max length for the chromosome, or the chromosomes are there but formatted slightly differently. The nomenclature needs to be exact, as specified in the FAQ document. For most example test cases, use hg18, unless the example instructs otherwise. We hope this helps, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Jennifer Jackson" <[email protected]> wrote: > From: "Jennifer Jackson" <[email protected]> > To: "Genome" <[email protected]> > Cc: "Peng Yu" <[email protected]> > Sent: Wednesday, January 6, 2010 4:21:27 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] The example of BED in the document is not working > > Repost: > > Subject: The example of BED in the document is not working > Sent By > "Peng Yu" <[email protected]> On: January 5, 2010 1:49 PM > To: [email protected] > > I input the example track found on > http://genome.ucsc.edu/FAQ/FAQformat#format1 > > track name=pairedReads description="Clone Paired Reads" useScore=1 > chr22 1000 5000 cloneA 960 + 1000 5000 0 2 567,488, 0,3512 > chr22 2000 6000 cloneB 900 - 2000 6000 0 2 433,399, 0,3601 > > But I see the following error. Is there anything wrong with the > example? > > Error Unrecognized format line 2 of custom track: chr22 1000 5000 > cloneA 960 + 1000 5000 0 2 567,488, 0,3512 (note: chrom names are > case > sensitive) > > > ------------------------------------------------ > Jennifer Jackson > UCSC Genome Bioinformatics Group > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
