I have used the snp and indel data released by the sanger mouse genomes project to impute the genomes of the 17 strains being sequenced. Now I want to map genomic positions between the reference genome and any of the 17 imputed genomes. How do I create an over.chain file so that I can do this with the liftover tool?
Thanks! John Didion _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
