Hello again, Please see these two scripts for batch BLAT job submissions and output options: http://genomewiki.cse.ucsc.edu/index.php/Blat_Scripts
Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Yongsheng Bai" <[email protected]> wrote: > From: "Yongsheng Bai" <[email protected]> > To: "Jennifer Jackson" <[email protected]> > Cc: [email protected] > Sent: Tuesday, January 19, 2010 8:13:04 AM GMT -08:00 US/Canada Pacific > Subject: RE: [Genome] Question > > Hello Jennifer or help desk, > > Would it be possible to align > 200 protein sequences against whole > hg18 or > hg19 using your web version BLAT, since I would like to visualize the > alignment result using the UCSC browser afterwards...? > > Thanks, > YB > > -----Original Message----- > From: Jennifer Jackson [mailto:[email protected]] > Sent: Friday, May 08, 2009 4:24 PM > To: [email protected] > Subject: Re: [Genome] Question > > Hello, > > The tool BLAT quickly aligns sequence data. Use the web version for > smaller data sets and set up a UNIX local copy and run command-line > for > larger datasets. > > http://genome.ucsc.edu/cgi-bin/hgBlat > http://genome.ucsc.edu/FAQ/FAQblat > > Jennifer Jackson > UCSC Genome Bioinformatics Group _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
