Hello I am interested in analysis of mitochondrial genome. I was looking at refFlat.txt <http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refFlat.txt.gz> and refGene.txt<http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refGene.txt.gz> (hg18) and it looks like to me that they do not contain full annotations for mitochondrial genes. I found only 3 annotations for microRNAs in these files. When I checked GeneBank RefSeq for mitochondrial genome (NC_012920 ) it contains 13 gens, 2 rRNAs, and 22 tRNAs. Is there any way to generate refFlat- and refGene-files using RefSeq?
Thank you, Ziedulla Abdullaev, Ph.D. LIP, NIAID, NIH _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
