Hello Genevieve, The UCSC Browser does not contain the rice genome, however there is a project at Michigan State University focusing on rice that includes a mirror of the UCSC Browser:
Rice Genome Annotation Project - MSU Rice Genome Annotation (Osa1) Release 6.1 http://rice.plantbiology.msu.edu/ http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/ A cursory look did not locate any liftOver-type data in the tools or downloads. The best advice is to contact them directly and ask. http://rice.plantbiology.msu.edu/osa1_contact.shtml#contacts Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Genevieve DeClerck" <[email protected]> wrote: > From: "Genevieve DeClerck" <[email protected]> > To: [email protected] > Sent: Thursday, January 21, 2010 8:06:41 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] over.chain file for rice > > Hi, > I need to update coordinates from Oryza sativa (rice) MSU5 to genome > version MSU6 and would like to use LiftOver locally. Is anyone aware > of an over.chain file I could use for this? > Thank you, > Genevieve > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
