Hello, The track group "Regulation" would contain annotation like this. Some tracks to start with in the Human Mar. 2006 Assembly (hg18) are:
TFBS - HMR Conserved Transcription Factor Binding Sites. SwitchGear TSS - SwitchGear Genomics Transcription Start Sites (The Human GRCh37 Assembly (hg19) is still undergoing development for tracks such as these, so use hg18.) You can set the position in the browser for your region to view the data. Or, use the Table Browser to extract the data. Some help with examples that provide many details: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#GetStarted http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#FineTuning http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser We hope this helps to get you started, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Amanda Formosa" <[email protected]> wrote: > From: "Amanda Formosa" <[email protected]> > To: [email protected] > Sent: Thursday, January 21, 2010 3:00:29 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] how to find Transcription Factor Binding Sites > > Dear UCSC, > > I would like to know how to search for Transcription Factor Binding > Sites and likely promoter regions with your program. > > For example, I have a region of interest on chromosome 17, - strand, > coordinates 1899670-1909378. I would like to know if there any > sub-regions within that region that are likely to have Transcription > Factor Binding activity and/or promoter activity. > > How can I do this? (Please explain step by step since I'm knew to > this) > > Thank you > > Amanda Formosa > > PhD candidate, The University of Rome, Tor Vergata, Department of > Internal Medicine. > > > > __________________________________________________________________ > Yahoo! Canada Toolbar: Search from anywhere on the web, and bookmark > your favourite sites. Download it now > http://ca.toolbar.yahoo.com. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
