Thanks so much for the info and the quick response. -Ben
Benjamin G Barwick Bioinformatic Analyst Biomarker Service Center - Winship Cancer Institute - Emory University Warren Lab - Department of Human Genetics - School of Medicine - Emory University Clinic B, Suite B4333 1365B Clifton Road NE Atlanta GA, 30322 (404) 778-1993 -----Original Message----- From: Jennifer Jackson [mailto:[email protected]] Sent: Monday, January 25, 2010 5:11 PM To: Barwick, Benjamin G Cc: [email protected] Subject: Re: [Genome] CpG islands Hello Benjamin, We do not have a track for CpG Islands based on this algorithm, however the authors have made available a tool to do the analysis. We were able to find the web version, but perhaps by looking around a bit more or contacting the authors the perl version could be found by you. Once you have results, it could be formatted and loaded as a custom track: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks http://genome.ucsc.edu/FAQ/FAQformat http://genomewiki.ucsc.edu/index.php/Selecting_a_graphing_track_data_format Some helpful links to get started: http://www.bioinfo.de/isb/2003030021/main.html http://www.uscnorris.com/cpgislands2/cpg.aspx We hope this is helpful for you, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Benjamin G Barwick" <[email protected]> wrote: > From: "Benjamin G Barwick" <[email protected]> > To: [email protected] > Sent: Monday, January 25, 2010 11:12:22 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] CpG islands > > Dear UCSC Genome staff, > > I was wondering if you have a data download of CpG islands according > to the Takai Jones criteria. > > Thank you, > -Ben > > Benjamin G. Barwick > Bioinformatic Analyst > Warren Lab - Human Genetics - School of Medicine - Emory University > Emory Biomarker Service Center - Winship Cancer Institute - Emory > University > > 1365 B Clifton Rd NE > Clinic B, Suite B4333 > Atlanta, GA 30322 > (404) 778-1993 > > > ________________________________ > This e-mail message (including any attachments) is for the sole use > of > the intended recipient(s) and may contain confidential and privileged > information. If the reader of this message is not the intended > recipient, you are hereby notified that any dissemination, > distribution > or copying of this message (including any attachments) is strictly > prohibited. > > If you have received this message in error, please contact > the sender by reply e-mail message and destroy all copies of the > original message (including attachments). > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited. If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments). _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
