Hi Brooke Rhead, When our users browse the tracks of mm8 to encounter problems, I find that the directory 'genbank.168.0' is empty. This may be rsync unsuccessful at that time.
We have from 'genbank.162.0' to 'genbank.174.0', only missing 'genbank.168.0', If we can download this data, this will solve users' problems. Thanks & Regards Wuqi -----Original Message----- From: Brooke Rhead [mailto:[email protected]] Sent: Friday, January 29, 2010 11:46 AM To: WANG Wuqi Cc: [email protected] Subject: Re: [Genome] How to dwonload genbank data 'genbank.168.0' ? Hi Wuqi, You are correct: we only keep the most current genbank files. GenBank data files and many tables (such as gbLoaded, gbStatus, refGene, etc.) are updated frequently. Both the files AND the tables need to be up-to-date in order for the Genome Browser to work properly. It sounds like you need to update your tables so that they work with the latest (genbank.175.0) data files. Is there some reason you specifically need the 'genbank.168.0' version of the data files? -- Brooke Rhead UCSC Genome Bioinformatics Group On 01/28/10 19:00, WANG Wuqi wrote: > Hi Brooke Rhead, > > Thanks for your email. > > In fact, there is NOT 'genbank.168.0' in ftp server > ftp://hgdownload.cse.ucsc.edu/. > > Currently, only FTP directory has the following data, > > FTP directory /gbdb/genbank/data/processed/ at hgdownload.cse.ucsc.edu > To view this FTP site in Windows Explorer, click Page, and then click > Open FTP Site in Windows Explorer. > -------------------------------------------------------------------------------- > Up to higher level directory > > 01/12/2010 06:33PM Directory . > 07/20/2008 12:00AM Directory .. > 01/24/2010 09:20AM Directory genbank.175.0 > 01/24/2010 09:20AM Directory refseq.38 > ---------------------------------------------------------------------- > ---------- > > Here, does not have 'genbank.168.0' we wanted, so we can not rsync. > > Could you put this data temporarily to ftp server for our download. > > > Thanks & Regards > > Wuqi > > > > > -----Original Message----- > From: Brooke Rhead [mailto:[email protected]] > Sent: Friday, January 29, 2010 2:35 AM > To: WANG Wuqi > Cc: 'Hiram Clawson'; [email protected] > Subject: Re: [Genome] How to dwonload genbank data 'genbank.168.0' ? > > > Hello Wuqi, > > The genbank data and the genbank tables need to be kept in sync. You > may need to update either the files or the tables. Here is a > previously-answered question on the topic: > > https://lists.soe.ucsc.edu/pipermail/genome-mirror/2009-February/00116 > 2.html > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > > WANG Wuqi wrote on 1/27/10 10:15 PM: >> Hi Hiram, >> >> Our ucsc genome mirror side genbank data 'genbank.168.0' is missing, >> but in ftp://hgdownload.cse.ucsc.edu/, there is not such available >> data for download. >> >> Please give advice >> >> >> Thanks & regards >> >> Wuqi >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
