Hello, We are not sure which genome you are interested in, but many assemblies contain a track called "BAC End Pairs". This track can be merged with a Gene track (examples: "UCSC Genes", "RefSeq Genes" - varies by assembly). http://genome.ucsc.edu -> Genome Browser -> select assembly and submit.
Once in an assembly, click on the track name links to read the data type and methods. Next, go into the Table browser. http://genome.ucsc.edu/cgi-bin/hgTables Export the data from each track and send the output to Galaxy. http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Once in Galaxy, functions that operate on genomic intervals can merge the data to map BACs that overlap with genes. Help is also available at Galaxy. Hopefully this will get you started, but please let us know if we can be of further assistance, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "土井田 誠" <[email protected]> wrote: > From: "土井田 誠" <[email protected]> > To: [email protected] > Sent: Saturday, January 30, 2010 8:43:28 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] A list of genes covered by BAC clones > > Dear Sir, > > > I studied chromosomal and genetic alterations associated with nodal > metastasis of oral squamous cell carinoma by means of array CGH > technique. > Could you show me a list of genes covered by BAC clones? > How can I get the information? > > > Sincerely yours, > > Dr. Makoto TOIDA, DDS, PhD > Associate Professor > Department of Oral and Maxillofacial Sciences > Gifu University Graduate School of Medicine > 1-1 Yanagido, Gifu 501-1194 > JAPAN > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
