Hello Carmen, This exact format cannot be exported from the Table browser, but a format that has the data per-feature (such as exon) would be GTF. From there, the data could be transformed using your own tools (perhaps even Excel) or in Galaxy (use "send output to Galaxy). The section "Text Manipulation" would be a good place to start. You could also contact their help list if you have questions.
FAQ for GTF format: http://genome.ucsc.edu/FAQ/FAQformat.html#format3 http://genome.ucsc.edu/FAQ/FAQformat.html#format4 Table browser location & help: http://genome.ucsc.edu/cgi-bin/hgTables http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html General path would be to: 1) go to Table browser and navigate to the gene's track 2) enter the gene's name/identifier 3) select output format as GTF and either download or send to Galaxy We apologize for the delay in our response, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group Subject: trying to get information in a particular format Sent By "Carmen Iwaszczcenko" <[email protected]> On: February 1, 2010 11:13 AM To: [email protected] Hello: I need the information to come out for a searched gene in this format: Exon Chromosome Start End (coordinate positions for the last 2). It needs to be text file (tab delimited) at the end, too. Is there a fast way to do this? Thanks, Carmen N. Iwaszczenko, BS Test Development Technologist PreventionGenetics LLC 3700 Downwind Drive Marshfield, WI 54449 PH: (715) 387-0484 x 106 FAX: (715) 384-3661 [email protected] The information contained in this e-mail message (including attachments) is intended only for the personal and confidential use of the recipient(s) named above. If the reader of this message is not the intended recipient or an agent responsible for delivering it to the intended recipient, you are hereby notified that you have received this document in error and that any review, dissemination, distribution, or copying of this message is strictly prohibited. If you have received this communication in error, please notify us immediately by e-mail, and delete the original message. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
