Dear All, I am using samtools for sam to bam conversion. but when i used view command along with -b -h -S -t -o parameters, initially it starts but it midst of conversion it gets aborted.
and it shows: [sam_header_read2] 1 sequences loaded. Parse error at line 851271: mapped sequence without CIGAR Can anybody tell me what exactly is the problem and any other converter which can solve this problem? NOTE: I have already checked my SAM file on IGV and it is showing the alignment. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
