Good Evening Craig: Please change the order of your browser lines to get the "hide all" as the first one:
browser hide all browser position chr2:222141245-222149245 browser full refGene browser dense snp128 browser pack multiz28way browser dense ruler With it like this, it will function as you expect. It is a mystery though why it behaves differently when pasted in the form vs. fetched from a URL. We will need to take a look at that. --Hiram Benson, Craig C wrote: > Hello, > > We have created a number of hyperlinks from our website at > http://www.urmc.rochester.edu/cvri/research/miano-lab/CArGome.cfm > to display custom tracks in BED format, but are having problems with the > browser lines commands. > > Clicking on the following link directly > http://genome.ucsc.edu/cgi-bin/hgTracks?org=human&position=chr2&db=hg18&complement_hg18=1&hgt.customText=http://www.urmc.rochester.edu/cvri/research/miano-lab/documents/EPHA4_ZOUT_UCSC.txt > > results in displaying our custom track, but ignoring the commands for the > browser lines. > > However, if I download the BED-formatted custom track, located here > http://www.urmc.rochester.edu/cvri/research/miano-lab/documents/EPHA4_ZOUT_UCSC.txt > and copy and paste the text into a custom track at the UCSC Genome browser > website, the browser line commands are implemented. > > Has anybody seen this discrepancy? Is there something wrong with my BED > formatted custom tracks? > > Best, > Craig > > > Craig C. Benson, MD > Med-Peds Resident, PGY-3 > University of Rochester Medical Center > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
