Hello Murim, Apologies for the delay in reply. A version of the personal genome variants track on hg19 is currently undergoing quality assurance evaluation and should be out soon. One of our developers had this to say about dbSNP and 1000 genomes:
Since dbSNP condenses so many submissions into its reference SNPs, the information about which SNPs are observed together in an individual is lost. So as long as there's not a staggering number of personal genomes, there is value in displaying the variants. Regarding 1000 Genomes in particular, the analysis group's genotyping/SNP-calling efforts are ongoing. Various groups have posted their own call sets for comparison and validation, and are converging on the new VCF (variant call format) file format for exchanging those. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 01/14/10 10:52, Murim Choi wrote: > Hello, > > I was wondering if you are planning to post personal genome variation > information for hg19. Or since dbSNP 130 integrates variations from > 1000 genomes and more, there won't be any separate personal genome > database? > > Thanks, > Murim > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
