Dear Genome, I have a file of positions in the hg18 that are of specific interest to me. I want to extract homologous sequences from the marmoset chain. For example, I want to extract marmoset chain sequences aligned to the chr1 995668-996276 in hg18.
I tried using the Table browser (using output format: sequence) but instead of a short (~600bps) sequence, it provides the whole contig (hg18_chainCalJac1_Contig4288 ). Is there any way I can extract only the sequences corresponding to the specified positions in the human genome? Many thanks in advance, Sincerely, Soojin Yi _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
