Hi all, I'd like to install a local copy of the genome browser. I'm following instructions from here: http://genome.ucsc.edu/admin/jk-install.html
When I try to type "make compile" or "make $DIRS" (from the Debian instructions here: http://genomewiki.ucsc.edu/index.php/Source_tree_compilation_on_Debian/Ubunt u), I get the following error: >>> ( cd hgSuggest && echo hgSuggest && make compile) hgSuggest make[1]: Entering directory `/usr/local/kent/src/hg/hgSuggest' gcc -O -g -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o hgSuggest.o -c hgSuggest.c cc1: warnings being treated as errors hgSuggest.c: In function รข: hgSuggest.c:74: error: format not a string literal and no format arguments make[1]: *** [hgSuggest.o] Error 1 make[1]: Leaving directory `/usr/local/kent/src/hg/hgSuggest' make: *** [hgSuggest.compile] Error 2 r...@paitemp:/usr/local/kent/src/hg# <<< What am I doing wrong? - I've created ~/bin/x86_64 (my $MACHTYPE) - Here are my environment variables: > echo $MYSQLLIBS -lmysqlclient -lz > echo $MYSQLINC /usr/include/mysql > echo $MACHTYPE x86_64 > echo $DIRS SCRIPTS=/usr/local/bin CGI_BIN=/usr/lib/cgi-bin DOCUMENTROOT=/var/www/genome BINDIR=/usr/local/bin ENCODE_PIPELINE_BIN=/usr/local/bin Other info: - My machine runs Ubuntu 9.10. - I've installed mysql-client mysql-server libmysqlclient-dev and apache2 Is there a binary for Ubuntu that I can just download and use? Thanks so much, Shraddha ------------------------------------------------------ Shraddha Pai Postdoctoral fellow, Petronis lab The Krembil Family Epigenetics Research Laboratory Centre for Addiction and Mental Health 250 College Street, Toronto, ON. ______________________________________________________________________ This email has been scanned by the CAMH Email Security System. ______________________________________________________________________ _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
