Apparently this was caused by having two sequences with the same name in your mRNA_genome target database. one example is hg18_refGene_NR_001298.
Jim Kent added a new check for this condition to BLAT and it will in future print an error message explaining the problem. Meanwhile, you can solve your problem by either removing duplicate in your target db, or else, if they really are unique sequences, give them all unique names. Thanks for helping us fix this issue! -Galt >> -------- Original Message -------- >> Subject: [Genome] Blat error blat: fuzzyFind.c:1438: ffFind: Assertion >> `hayStart <= hayEnd' failed. >> Date: Fri, 26 Feb 2010 14:39:13 -0600 >> From: nipun kakkar <[email protected]> >> To: [email protected] >> >> Hi All >> >> I am getting this error when i BLAT my set of sequences to the reference >> genome. >> >> blat: fuzzyFind.c:1438: ffFind: Assertion `hayStart <= hayEnd' failed. >> >> I have made sure that there is no redundancy in the input file. Can >> anyone >> suggest as to what can be a fix for this error.? >> >> Thanks, >> Nipun >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
