Download the gap table dump and load that into your local database. featureBits needs the gap table to function. Note the -countGaps option.
--Hiram Amit Indap wrote: > Hi UCSC > > I downloaded the CCDS (ccdsGene.txt) and Gencode (wgEncodeGencodeAutoV3.txt) > tables and loaded them into a local database of mine. I wanted to see the > intersection of bases between the two gene models, so I ran featureBits: > > featureBits AmitDb wgEncodeGencodeAutoV3 ccdsGene > > The following message gets printed to STDERR several times: > > table gap doesn't exist > > I'm not sure why I am getting that message and whether then I should trust my > results. Thanks for your help! > > Amit > > Amit R. Indap > [email protected] > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
