hello everyone, I am working on SOLiD platform and want to use SOLiD data for RNAseq analysis. For that i am trying to utilize bowtie for mapping an ERANGE for RPKM. For bowtie mapping we need expanded genome. i am trying to utilize getsplicefa.py of ERANGE to get splice file. but while doing this is am getting the following error:
psyco not running /share/apps/ERANGE/project/genome/commoncode/getsplicefa.py: version 3.2 43180 369006 could not get chr3:72692980-72695247 could not get chr3:72695415-72695619 could not get chr3:72695669-72704339 could not get chr3:72704428-72707527 could not get chr3:72707652-72708182 could not get chr3:72708239-72708321 could not get chr3:72708406-72711003 could not get chr3:72711152-72712888 could not get chr3:72713005-72713089 contt... Any help is appreciable Saha _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
