Hi Rahul, Bioconductor (http://bioconductor.org) has some facilities for this. See in particular the matchProbePair() function in the Biostrings package:
http://bioconductor.org/packages/2.5/bioc/manuals/Biostrings/man/Biostrings.pdf Page 83. Cheers, H. Rahul Prabhu wrote: > Is there a program available that takes a bunch of primer sets and finds the > amplimers through insilico PCR? It can be quite cumbersome doing this > manually. > > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: [email protected] Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
