Hello, Use the Table browser to perform an intersection between the two tracks (your custom track and the CpG Island track).
If you have two tracks - A and B - and intersection will produce output with all lines of file A that have overlap with file B. http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html#Intersection Should you want to do a merge between the two tracks/tables, then send both over to Galaxy (use the Table browser and check output "Galaxy") and perform an interval intersection. This will produce output with all lines of file A along with the lines from file B that have overlap. Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 3/23/10 2:18 PM, Xinjun Zhang wrote: > > Hi : > I have uploaded my custom track (some microRNA genes) and I would like to > find if there are some CpG islands in my track. I know I could download all > the CpG islands and check if there are some fall into that track. But I would > like to know if there are any direct ways. Thanks! > Xinjun > _________________________________________________________________ > Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. > https://signup.live.com/signup.aspx?id=60969 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
