Hello Will, I was able to find an answer that addressed your question exactly. It includes direct comments from the algorithm's author, Adam Siepel: https://lists.soe.ucsc.edu/pipermail/genome/2009-July/019616.html
If you need any more help, please let us know, Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 3/29/10 12:30 PM, Will Liao wrote: > This question most certainly has been asked an answered but here it goes > anyways.... > > I have short regions (<200bp) that I want to calculat phastCons scores for > so I can compare the level of conservation. I am thinking about just taking > the mean for each but I suppose there has to be a better way. Do you have > any idea how I can do this? > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
