Hi guys,
I am very new at this genome viewer business, so please bare with me if
I don't have the terminology or understanding of the inner workings.
I need to get genome browser up and running for genome that we have in
the lab. I have been able to get a local copy of genome browser up and
running, and have been able to add a custom track, along with gc5Base, and
wiggle info as described here
(http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database).
Everything seem to work as expected (I haven't played around with all the
options in trackDb.ra, but that will come later).
Issue 1:
Now the issue is that I am not able to get to the actually proteins/seq
for the tracks loaded. From what I understand I can create an entry in gdbPdb,
which seems straight forward (insert statement with org db name like hg18 and
proteinsX name). But I can't see find information as to what needs to be in
proteinesX database. I wasn't able find a utility or hgX loader script either
(unless I missed it). Could someone please point me in the right direction, as
to how to upload my protein/seq data.
Issue 2:
I have some metadata associated with each chromosome that I loaded into
db, is there a way to show that info on the browser? I have a tab delimited
file of protein id, gotermId and go annotations.
Thank you
Jay
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