Hello UCSC's Team,

 

We are performing a local installation of the Genome Browser. 

During this installation, the downloading of numerous data and databases
occurs. Most of these databases represent the builds of genomes such as
mm8, hg18, rn4, tetNig1, panTro2, etc.

 

Among these list of databases (115 at this date), there are some
databases which do not represent genome's build but information about
molecule or other type of information such as:

VisiGene, uniprot, proteome, go080130, go, hgfixed, hgcentral, mysql,
proteins040315, proteins050415 , proteins051015, proteins060115, etc.,
... ,  sp040315, sp050415, etc., ..., sp 090821.

 

We have guessed the meaning of some of them based on their names, but we
still have no clue about the meaning and purpose of some of them;

 

QUESTIONS:

1.       May you let us know what the databases with names sp090821,
spXXXXXX (where X are number) along with proteinsXXXXXX represent?

2.       Are the number associated to them related to the date version?

3.       If so, do we still have to keep all the version to get fully
functional Genome Browser, or can we just keep the latest version of it?

4.       Do you have any list which gives details about these 115
databases we have retrieved?

 

 

I Thank you in advance for your reply,

 

Best Regards,

 

Christophe LEGENDRE, PhD

 

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