Pardon me Wes, this appears to be an error in the v227 source tree. If you could get past this validateFiles directory, the rest of the tree should be OK. Or get this directory to top-of-tree status with the public CVS server source tree.
--Hiram ----- Original Message ----- From: "Hiram Clawson" <[email protected]> To: "Wes Barris" <[email protected]> Cc: "Genome List" <[email protected]> Sent: Monday, April 12, 2010 6:08:27 PM GMT -08:00 Tijuana / Baja California Subject: Re: [Genome] Make errors in mirrored src Good Afternoon Wes: You should be OK with the source tree without BAM if you do not have USE_BAM=1 defined in your environment. Did you turn on USE_BAM=1 as a shell environment setting anywhere ? --Hiram ----- Original Message ----- From: "Wes Barris" <[email protected]> To: "Genome List" <[email protected]> Sent: Monday, April 12, 2010 5:50:12 PM GMT -08:00 Tijuana / Baja California Subject: [Genome] Make errors in mirrored src We run a mirror of the UCSC site. After our latest rsync we are getting errors during the "make" step. They appear to be related to SAMtools sam.h and bam.h. Are these a new prerequisite for mirroring the UCSC site? Or, are they supposed to be included in the mirroring step? >> Making source version=[227] [/home/ucsc/bin/mirror_scripts/make_jksrc.sh >> /ucsc/db2/ucsc_mirror_src/kent/src /home/ucsc/logs/build.log] | Tue Apr 13 >> 09:52:14 2010 In file included from validateFiles.c:9: ../../inc/bamFile.h:10:17: error: bam.h: No such file or directory ../../inc/bamFile.h:11:17: error: sam.h: No such file or directory In file included from validateFiles.c:9: _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
