Hello Maggie, The guess is that you are looking in the Human Mar. 2006 (NCBI36/hg18) assembly at the track HGDP Hetrzygsty? And would like the actual alleles used as input to the summery calculations?
If so, the track HGDP Allele has the actual alleles and frequency per population group. The primary table is hgdpGeo. Linked data is labeled as hgdpHzy<population group>. The data can be viewed in the Table browser or downloaded. (Good to examine in the Table browser first to learn file formats, etc.). The data can be downloaded from here (ftp instuctions in link): http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ table_name == file_name.txt.gz -> data == file_name.sql -> schema The data was sourced here (links to raw data): http://hgdp.uchicago.edu/ Hopefully this helps. If you were looking at a different data set or have followup questions, please let us know and include more specific information such as the assembly and exact track information, Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/16/10 6:39 AM, Karst, Margaret L. wrote: > Dear UCSC Genome Bioinformatics, > > I've recently been introduced to your Table Browser to locate SNPs in a > selected area of the genome and it supplies the needed information. I > do have one question. Is it possible to retrieve heterozygosity > information for individual races or group of races rather than as a lump > average (avHet) of all available data? > > Thank you, > > Maggie Karst > > Margaret L. Karst > Senior Research Technologist I > Cardiovascular Genetics Laboratory > Phone: (507) 538-0133 > Fax: (507) 266-9936 > E-mail: [email protected] > _____________________________ > Mayo Clinic > 527 Stabile > 200 First Street SW > Rochester, MN 55905 > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
