Hello Jing Xia, If there are sequences a UCSC track does not contain, that you would like to have mapped and included in a track, the best solution is for you to run the alignment yourself, format the results, and load as a custom track.
BLAT help: http://genome.ucsc.edu/FAQ/FAQblat.html Custom track help: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks Hopefully this will help, Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 4/19/10 9:37 AM, Xia, Jing wrote: > Dear UCSC genome group, > > I am wondering if there is a table including genomic loci for all sequences > that could be mapped to mm9 by BLAT. > > For example, NM_001037910 sequence in NCBI is suppressed because it is not > support for protein currently but it seems that the sequence can be still > mapped to genome. so does it mean we need to keep it somewhere? > > I wonder if i can the genomic loci of this sequence in one of the tables. > > Many thanks, > Jing Xia > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
