Hello - The last two fields are
f11) block sizes f12) block starts FAQ for BED format: http://genome-test.cse.ucsc.edu/FAQ/FAQformat.html#format1 Coordinate system defined (zero-based, half-open): http://genomewiki.ucsc.edu/index.php/Coordinate_Transforms Hopefully this helps, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 5/3/10 2:11 PM, Vipin TS wrote: > Hi UCSC Genome browser team, > > I was analyzing the BED file architecture, and I am finding difficulty in > recognizing the last two fields in a BED file. Here I am pasting the file > content. > > track name="BED track" description="BED format custom track example" > visibility=2 color=0,128,0 useScore=1 > chr22 1000 5000 itemA 960 + 1100 4700 0 2 1567,1488, 0,2512 > chr22 2000 7000 itemB 200 - 2200 6950 0 4 433,100,550,1500 0,500,2000,3500 > > I am confused about the last two fields of this BED file. Please let me know > the details. > > many thanks, Vipin T S > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
