Hi Hiram, I looked through README files several times, src/product/README.trackDb and src/hg/makeDb/trackDb/README.
I loaded my original wig file to UCSC genome browser to ensure nothing is wrong. The next are the commands I used to load tracks to local browser. [l...@research tmp]$ /opt/kent/wigEncode PolII_eland_sorted2.wig PolII.wig PolII.wib Converted PolII_eland_sorted2.wig, upper limit 4385.00, lower limit 2.00 [l...@research ~]$ /opt/kent/hgLoadWiggle hg18 wigExample PolII.wig Connected to database hg18 for track wigExample Creating wiggle table definition in hg18.wigExample Saving wiggle.tab WARNING: Exceeded chrM size 16624 > 16571. dropping 3 data point(s) Loading hg18 [l...@research tmp]$ cp PolII.wib /gbdb/hg18/wib/ I don't know the above is needed or not, but I follow the help of wigEncode. [l...@research tmp]$ /opt/kent/hgTrackDb human hg18 trackDb_wigExample ~/bin/kent/src/hg/lib/trackDb.sql . Loaded 1 track descriptions total Loaded database hg18 [l...@research tmp]$ /opt/kent/hgFindSpec human hg18 hgFindspec_wigExample ~/bin/kent/src/hg/lib/hgFindSpec.sql . Loaded 0 search specs total Loaded database hg18 also edit hg.conf file, vim /var/www/html/genomebrowser/cgi-bin/hg.conf db.trackDb=trackDb,trackDb_wigExample Please check the following link, looks like the data and track specifications in database, however, it wouldn't see on the website. Thanks, Tiandao [l...@research tmp]$ more trackDb.ra track wigExample shortLabel Pol II longLabel Pol II in 25-Base Windows group user priority 23.5 visibility full autoScale On maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 spanList 5 type wig 0 100 [l...@research tmp]$ mysql> select * from trackDb_wigExample; +------------+------------+-----------+---------------------------+------------+----------+--------+--------+--------+-----------+-----------+-----------+----------+---------+---------------+--------------+-----+------+------+---------+---------------------------------------------------------------------------------------------------------------------------------+ | tableName | shortLabel | type | longLabel | visibility | priority | colorR | colorG | colorB | altColorR | altColorG | altColorB | useScore | private | restrictCount | restrictList | url | html | grp | canPack | settings | +------------+------------+-----------+---------------------------+------------+----------+--------+--------+--------+-----------+-----------+-----------+----------+---------+---------------+--------------+-----+------+------+---------+---------------------------------------------------------------------------------------------------------------------------------+ | wigExample | Pol II | wig 0 100 | Pol II in 25-Base Windows | 2 | 23.5 | 0 | 0 | 0 | 128 | 128 | 128 | 0 | 0 | 0 | | | | user | 0 | autoScale On graphTypeDefault Bar gridDefault OFF maxHeightPixels 128:36:16 spanList 5 viewLimits 30:70 windowingFunction Mean | +------------+------------+-----------+---------------------------+------------+----------+--------+--------+--------+-----------+-----------+-----------+----------+---------+---------------+--------------+-----+------+------+---------+---------------------------------------------------------------------------------------------------------------------------------+ 1 row in set (0.00 sec) _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
