Update: To remove thick start/stop from the display, set both values to be equal to either the chromStart or the chromEnd value.
This is a similar method to what we use for native Gene tracks for non-coding sequence alignments (in the genePred file format, set cdsStart/End both equal to txStart or txEnd). Thank you again, Jennifer On 5/12/10 12:15 PM, Jennifer Jackson wrote: > Hello Rachel, > > You can use a "." dot as a placeholder for the strand field. > > You will notice in the native browser tracks that we sometimes assign > everything to the (+) strand for cases like this (dbSNP is an example). > > The choice is yours to make, > > Thanks, > Jennifer > > --------------------------------- > Jennifer Jackson > UCSC Genome Informatics Group > http://genome.ucsc.edu/ > > On 5/12/10 7:22 AM, Rachel A. Soemedi wrote: >> Hi, >> i'm trying to visualize our CNV findings on the browser and i'm using the >> BED format to load the custom track. Is there a way for me not to use the >> strand field? >> Below is line 3 that i modified from the example in the User guide: >> >> chr4 173545454 180105276 6.0_dn_91 0 + >> 173545454 180105276 0,100,255 >> >> For the optional fields i need to visualize the name and color, thickStart >> and End i don't really need, and i would much prefer to not visualize any >> strand orientation because it can be misleading. Is that possible? >> >> thanks in advance, >> rachel >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
