Hello Einat, Non-coding genes are included in the UCSC Genes & RefSeq Genes tracks already. To find non-coding genes, look for those with cdsStart equal to cdsEnd. The actual value will be either the txStart or the txEnd depending on the track, but the interpretation is the same.
Other tracks also contain non-coding data, such as the track sno/miRNA. The best advice is to review the track descriptions to locate the data that best meets your research needs. Table browser help: http://genome.ucsc.edu/cgi-bin/hgTables http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html When using the Table browser, saving filtered data as a custom track is always a potential option. http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks Thanks, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ Subject: ncRNA in hg19 From: "Einat Sitbon" <[email protected]> Date: Tue, 18 May 2010 12:13:26 +0300 To: <[email protected]> Hi, Are you planning to add a Non-coding RNA Genes track to hg19 in the near future? Thanks, Einat Einat Sitbon, Ph.D. Manager, Bioinformatics Rosetta Genomics Ltd. 10 Plaut St., Rehovot, Israel, 76706 T: +972.73.2220719 | F: +972.73.2220701 [email protected] www.rosettagenomics.com | NASDAQ: ROSG This email message contains confidential and/or privileged information for the sole use of the person to whom it is addressed. If you are not the intended recipient, please contact the sender immediately by reply email and destroy all copies of the original message. You are hereby notified that any unauthorized review, dissemination, use or copying of this information is strictly prohibited. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
