Hi there,
I loaded my track as a custom track and I added the following header:
track type=wiggle_0 name="XXX" description="YYY" maxHeightPixels=200:100:40
viewLimits=-5.0:5.0 autoScale="off" graphType="bar" visibility=full
color=250,0,0 altColor=0,100,200 priority=19
I have check the list and didn't find any scientific notation. I do have more
than 200,000 rows in my txt file, will that cause any problem?
Hong
Hong Ji, Ph. D
Postdoc Fellow
Center for Epigenetics
Johns Hopkins School of Medicine
580 Rangos Building,
855 North Wolfe Street
Baltimore, MD 21205
Email:[email protected]
Lab phone: 410-614-3478
----- Original Message -----
From: Jennifer Jackson <[email protected]>
Date: Monday, May 17, 2010 6:34 pm
Subject: Re: [Genome] error
To: Hong Ji <[email protected]>
Cc: [email protected]
> Update:
>
> If by chance you are using scientific notation in the input file, that
> may be the root cause of your problems. Try changing those values to
> be fully expanded integers then reload.
>
> As a side note, we will be making the exit more informative when a
> non-integer is expected but not in the input. This will be made
> available in the next code base release at the latest. This change
> will have no impact for actual usage (expanded integers still will be
> required), but it should help make the exit less cryptic.
>
> Thank you for letting us know about this and we hope that one of these
> options resolves your loading issues,
>
> Thanks,
> Jennifer
>
> On 5/17/10 3:15 PM, Jennifer Jackson wrote:
> >Hello,
> >
> >The name of your file looks like a custom track, but you are loading
> as
> >a native track into your own mirror? Did you remove all of the
> >browser/track lines from the file before loading?
> >
> >If that is not the problem, please send more details about your exact
> >procedure (assembly, your mirror or genome.ucsc?, load as native track
> >or custom track, small data sample, exact command line arguments - if
> >any). We will try to diagnose the problem from there.
> >
> >Thanks,
> >Jennifer
> >
> >---------------------------------
> >Jennifer Jackson
> >UCSC Genome Informatics Group
> >
> >
> >On 5/15/10 9:00 AM, Hong Ji wrote:
> >>I am trying to upload a genome track and keep getting the following
> error:
> >>
> >>track load error (track name='ct_xxx_6191'):
> >>invalid signed number: "1.13e+08"
> >>
> >>I tried to upload the top few lines and it worked. Anyone know
> what’s wrong? Thanks!
> >>
> >>
> >>
> >>
> >>
> >>_______________________________________________
> >>Genome maillist - [email protected]
> >>
> >_______________________________________________
> >Genome maillist - [email protected]
> >
_______________________________________________
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