Hi Peter, I remember a previous post on this: http://www.mail-archive.com/[email protected]/msg01114.html . The user said that the method presented with the table browser timed out, but it should work now.
If you experience other problems or need the flanking genes annotated: I wrote a script some time ago as an alternative, you can give it a try, it might at least be a good starting point (NB: you should use a chromosome.sizes file for this, see help messages): http://max.smith.man.ac.uk/download/scripts/bedBetween.py cheers Max On Mon, May 24, 2010 at 12:56 PM, Peter Cote <[email protected]> wrote: > Hello > > I am trying to obtain the coordinates for the intergenic regions in the > Human Genome. Using the knownGenes table, on the Table Browser is there a > way to join the overlapping transcripts and then obtain the intergenic > intervals between these genes? > > Thanks! > > Peter > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
