Hi Janet, Our phastCons data uses 1-based coordinates, unlike most other datasets in our browser. You can read more about it here: http://genome.ucsc.edu/goldenPath/help/phastCons.html Please feel welcome to contact us again with further inquiries.
Antonio Coelho UCSC Genome Bioinformatics Group Janet Young wrote: > Hi there, > > I have a question for you - hopefully it's an easy one. I've > downloaded some phastCons scores for some regions I'm interested in > using TableBrowser. Do the downloaded score files follow a 0-based or > 1-based coordinate system? > > (maybe this could be an addendum to the FAQ question about coords > differing by one base). > > thanks very much! > > Janet Young > > ------------------------------------------------------------------- > > Dr. Janet Young (Trask lab) > > Fred Hutchinson Cancer Research Center > 1100 Fairview Avenue N., C3-168, > P.O. Box 19024, Seattle, WA 98109-1024, USA. > > tel: (206) 667 1471 fax: (206) 667 6524 > email: jayoung ...at... fhcrc.org > > http://www.fhcrc.org/labs/trask/ > > ------------------------------------------------------------------- > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
