Hello, Unfortunately, UCSC does not have ancestor comparative data available at this time. There have been some related experiments performed in the past internally, but this was done some time ago, did not include liftOver, and cannot be recommended for use.
We are sorry that we cannot help. We suggest searching against the literature and/or other genome web sites to locate an appropriate dataset. If a genome for comparison is located, you could do the chain and liftOver analysis yourself. This prior mailing list question/answer provides the starting information should you choose to do this: https://lists.soe.ucsc.edu/pipermail/genome/2010-May/022366.html Best wishes for your project, Jennifer --------------------------------- Jennifer Jackson UCSC Genome Informatics Group http://genome.ucsc.edu/ On 5/26/10 5:44 AM, Wouter Meuleman wrote: > Dear all, > > We would like to map mouse and human data to their common ancestor > genome, i.e., Euarchontoglires or Boreoeutherian, and vice versa. > Ideally, we would like to use the liftOver tool for this. Are there > already liftOver chain files available for this? If not, what is > currently the preferred way to obtain synteny blocks/mappings for > mouse<->ancestor and human<->ancestor? > > Thanks in advance, > -Wouter Meuleman. > Netherlands Cancer Institute > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
