Hi Hiram, I download the gap positions from tables browser. I found there are some positions that are "N"s in the genome but didn't show up in the gap file. For example: chr2:31579444-31580294 chr2:32945702-32946701 chr2:32995197-32996196 Do you know what are these regions if they are not gaps? Thank you! Sincerely, Qianqian
On Sun, Jun 6, 2010 at 10:14 PM, Hiram Clawson <[email protected]> wrote: > From the public MySQL server: > > $ mysql --user=genome --host=genome-mysql.cse.ucsc.edu \ > -A -e "select chrom,chromStart,chromEnd,type from gap;" hg18 > > Or, from the tables browser at genome.ucsc.edu > Use the "gap" table. > > --Hiram > > Qianqian Zhu wrote: > >> Hi, >> >> I'm wondering where can I obtain the locations of assembly gaps in hg18. >> Thank you! >> >> Sincerely, >> Qianqian >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
