Hello Shobha, You can access this data by using the knownGene table in conjuction with the kgXref table in our Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables)
Select the 'Genes and Gene Prediction tracks' group, the 'UCSC Genes' track, and 'knownGene' table. Select the genomic region you want data from in the position box. You can define multiple genomic regions by clicking 'define regions'. Change the output format to 'selected fields from primary and related tables', and click 'get output'. This will take you to a new screen. Go the the section titled ' hg19.kgXref fields' Select kgID and spID from this section, and any other you may want, such as gene name, position, or strand from the knownGene section. Press 'Get output' near the top of the page. I hope this gets you what you need. Please contact us again with further inquiries. Best Antonio Coelho UCSC Genome Bioinformatics Group Shobha Potluri wrote: > Hi, > I am trying to obtain the uniprot ids of the proteins > corresponding to all knownGenes for a given chromosome position. > Kindly point me to which tables of the UCSC database I would need to > download in order to get this. > > Thanks a lot, > Shobha. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
