Hi, I am using UCSC genome browser to investigate the possible meaning of a SNP I found with target resequencing of a region. I chose the "base" visualization and I noticed some weird thing. The one I am attaching is only one example. If you look at the grey rows (that I think are the three possible frames) you see that for example the SNP in the 135795890 position may be in the second position of an ACT codon (coding for T), a first position of a CTT codon (coding for L) and in the third position of another codon coding for N. If you look to the UCSC genes track you see that there is an S...so, what is the meaning of the grey rows that appeared when you select the full visualization? WHat is the correct info? The S or all the other possibilities? When the goal is to understand the possible drawbacks of a new SNPs is very important to be sure what you are looking at.
Thanks a lot Federica -- Dr. Federica Torri, PhD Dip Scienze e Tecnologie Biomediche Università Studi di Milano c/o Filarete Foundation Viale Ortles 22/4 20139 Milano Italy Tel. +39 02 56620214
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