I tried some example and want to understand what pslSort bases on for sorting. So far, I don't see clear what the sorting criterion is.
The help page is sparse for me to understand. Would you please let me know how psl files are sorted? What are the two stages for? Why are there two stages rather one stage? I think that g2g option sort the alignment based on genomic location. But is it the start (or end, middle of the alignment)? What the option 'dirs' is based on? -- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
