Hi,
I was looking at a few genes on the chimp genome. For example:
refGene.txt:115 NM_001037299 chr1 + 44440530 44635826
44440530 44635826 10
44440530,44499084,44520194,44545087,44603658,44604593,44604966,44626277,44626655,44635737,
44440648,44499132,44520237,44545182,44603724,44604689,44605153,44626424,44626802,44635826,
0 ST3GAL3 cmpl incmpl 0,1,1,2,2,2,2,0,0,0,
refSeqAli.txt:115 1036 0 0 0 1 91 9 194260
+ NM_001037299 112801127 chr1 229974691 44440530
44635826 10 118,48,43,95,66,96,187,147,147,89,
0,118,166,209,395,461,557,744,891,1038,
44440530,44499084,44520194,44545087,44603658,44604593,44604966,44626277,44626655,44635737,
The coordinates 44440530 44635826 are the same in both files. But
with very few genes we have the following discrepancy :
refGene.txt:1002 NM_001079831 chr19 - 54736378
54737410 54736378 54737410 354736378,54736785,54737352,
54736550,54736953,54737410, 0 CGB1 incmpl cmpl 1,1,0,
/storage/grenaud/.snpAnnon/panTro2/database/refSeqAli.txt:1002 398
1 0 0 0 0 2 634 - NM_001079831 399 0399
chr19 64473437 54736377 54737410 3 173,168,58,
0,173,341, 54736377,54736785,54737352,
The start coordinate in refGene is 54736378 but it is 54736377 in
refSeqAli. Is there any reason for this or is this a bug ?
Thank you,
Gabriel
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