Hi, Does anyone know how I can access introns and exons for fruit fly (dm2) through DAS? I've looked at the refGene and flyBaseGene types but they seem to lack this information. Is there a webpage which gives an overview of what is available through DAS?
The FAQ (http://genome.ucsc.edu/FAQ/FAQdownloads.html#download23) states: For example, here is a query that returns all the records in the refGene table for the chromosome position chr1:1-100000 on the hg16 assembly: http://genome.ucsc.edu/cgi-bin/das/hg16/features?segment=1:1,100000;type=refGene but when I run it each feature returned looks like: <FEATURE id="NR_026822.chr1.24474.2" label="NR_026822"> <TYPE category="transcription" id="refGene" reference="no">RefSeq Genes</TYPE> <METHOD /> <START>25584</START> <END>25944</END> <SCORE>-</SCORE> <ORIENTATION>-</ORIENTATION> <PHASE>-</PHASE> <GROUP id="NR_026822.chr1.24474"> <LINK href="http://genome.ucsc.edu/cgi-bin/hgTracks?position=chr1:24474-25944&db=hg16";>Link to UCSC Browser</LINK> </GROUP> </FEATURE> whereas the documentation for the refGene table (http://genome.ucsc.edu/cgi-bin/hgTables?db=dm2&hgta_group=genes&hgta_track=refGene&hgta_table=refGene&hgta_doSchema=describe+table+schema) suggests there is much more information in the table, including exon locations. Thanks, John. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
