Hi Ivan,
A great way to determine the table properties is to view the schema. For
example you can view the schema of the UCSC Genes in hg19 by clicking on the
UCSC Genes track link while in the browser. Click on "view schema". Then you
will need to click on each of the tables (hg19.kgProtAlias.kgID and
hg19.kgSpAlias.kgID) to view their schema's. To view what the table's purpose
is look at "Format description:"
Schema for kgSpAlias
Format description: Associates Known Gene ID with UniProt accession and gene or
protein alias
Schema for kgProtAlias
Format description: Link together a Known Gene ID and a protein alias
So the difference it is that kgSpAlias could have a gene or a protein alias
where as kgProtAlias can only have a protein alias.
I hope this helps. Please feel free to contact the mailing list if you have
further questions.
Vanessa Kirkup Swing
UCSC Genome Bioinformatics Group
----- Original Message -----
From: "Ivan Adzhubey" <[email protected]>
To: [email protected]
Sent: Thursday, July 1, 2010 12:30:11 PM GMT -08:00 US/Canada Pacific
Subject: [Genome] kgSpAlias vs. kgProtAlias
Hi,
Can someone please explain what's the difference between kgSpAlias and
kgProtAlias tables?
Thanks in advance!
--Ivan
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
