Hello Bogdan, To retrieve the coordinates for the 3' UTRs, go to our table browser: http://genome.ucsc.edu/cgi-bin/hgTables
Select your assembly (hg18), group (Genes and Gene Prediction tracks), track (UCSC Genes), and table (knownGene). You can use the 'region' section to narrow your query by genomic region, or the 'identifiers' option to narrow it by specific gene IDs. Under output format, select 'custom track', and click 'get output'. In the next page, select "3' UTR Exons" and click 'get custom track in file'. I hope this gets you what you need. Please contact us again if you have further questions. Best Antonio Coelho UCSC Genome Bioinformatics Group Bogdan Tanasa wrote: > Hello everyone, > > please could you let me know a good way to retrieve the coordinates of > 3'UTRs of the hg18 genes ? thanks a lot ! > > -- Bogdan > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
