Hello Harsh, It may help to review the tracks within the Assembly viewer in the browser as a first step. Clicking on a track name links to the track controls (for display), followed by a link to the primary table in the Table browser, and a description of the methods, sources, credits, etc.
After the tracks of interest are identified, move to the Table browser (or the Downloads server) to obtain the data. To generate the exact lists you describe, some analysis is probably necessary. The Table browser can do some filtering, but using your own local tools or a web-based tool set such as Galaxy is likely necessary. In the Human Mar. 2006 (NCBI36/hg18) assembly, suggested tracks to examine first are: Regulation -> HAIB TFBS, TFBS Conserved, Yale TFBS And available in most assemblies: Comparative Genomics -> Conservation, Net/Chain tracks I hope this information is helpful. Please feel free to contact the help mailing list again if you require further assistance. Best regards, Jen UCSC Genome Browser Support http://genome.ucsc.edu/contacts.html [email protected] [email protected] On 7/9/10 6:07 AM, Dweep, Harsh wrote: > Dear UCSC Team, > > I searched the Table browser of UCSC database to download conserved and > non-conserved list of transcription factors among human, mouse and rat. I am > unable to find this option, can allow me to download conserved and > non-conserved lists. > > Could you please help me in this regard to locate this option in UCSC > database or some hint or tips or suggestion on it? > > I am very much looking forward to hear from you. > > > Thanks in advance > > With Sincere Regards > Harsh Dweep > PhD Schlor > University of Heidelberg > Germany > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
