Hi Jen, Thanks for the quick reply. I am actually looking for the file generating description for the refGene file in particular on http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/alignments/. This file is not just a refgene annotation, but restricted to the cds region only. Therefore, I need to know which version of the annotation it has used when they created this file. Furthermore, I do see some differentiation between the cds region in this file and the annotation file in the hg19 annotation dataset. So it's very important for me to know which kind of filters it has been applied to.
Best, Maria On Fri, Jul 16, 2010 at 1:19 PM, Jennifer Jackson <[email protected]> wrote: > Hello Maria, > > This type of information can be found on the track's description page. To > view this, open the assembly browser to the target database and click on the > track name. > > For hg19, the path would be: > 1 - http://genome.ucsc.edu/ > 2 - Genome Browser > 3 - Choose Clade = Mammal, Genome = Human, Assembly = Feb. 2009 > (GRCh37/hg19) and submit > 4 - RefSeq Genes is in the third track grouping, Gene and Gene Predictions > > I hope this information is helpful. Please feel free to contact the > help mailing list again if you require further assistance. > > Best regards, > > Jen > UCSC Genome Browser Support > > > On 7/16/10 1:13 PM, Xin Ma wrote: > >> Hi, >> >> I am trying to use the refGene file on >> http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/alignments/, >> however I can't really find corresponding information about this file on >> how >> this file was created, which version of the gene annotation file it has >> used >> and what kind of filters, if any, have been applied when generating this >> file. >> Please direct me to the right place if you know where I can find these >> information. >> >> Thanks, >> Maria >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
