Hi Jen, I checked on #1 and #3 again, they are correct. Where could I find a sample html file for htmlPath?
Thanks, Tiandao On Mon, Jul 19, 2010 at 2:34 PM, Jennifer Jackson <[email protected]> wrote: > Hello Tiandao, > > Thank you for sending feedback. Two immediate problems are: > > 1) The dbDb.name value must equal the defaultDb.genome and > genomeClade.genome value. This could be the root cause of the problem on the > gateway page. > > 2) the htmlPath value should point directly at a .html file, not just a > directory. This may come up as a problem after #1 is corrected. > > Also should be verified: > > 3) double check that you have a .2bit file at /gbdb/cmv/*.2bit named the > same as the dbDb.name value like "name.2bit" and in the proper format. Use > the utility faToTwoBit from the kent source tree to create the file if > needed. > http://genome.ucsc.edu/FAQ/FAQformat.html#format7 > > Thanks, > > Jen > UCSC Genome Browser Support > > On 7/19/10 11:56 AM, Tiandao Li wrote: > >> Hi Jen, >> >> I followed this instruction, and the following is my dbDb input. >> >> INSERT INTO dbDb >> (name, description, nibPath, organism, >> defaultPos, active, orderKey, genome, scientificName, >> htmlPath, hgNearOk, hgPbOk, sourceName) >> VALUES >> ("Mouse_NC_004065", "July 2010", "/gbdb/cmv", "Mouse_NC_004065", >> "NC_004065:1-1000", 1, 11, "Mouse_NC_004065", "Mouse_NC_004065", >> "/gbdb/cmv", 0, 0, "version 1"); >> >> I removed all my imports, and repeated all steps again, still had this >> error. As I said in my last email, if I click "add custom tracks" >> button, and choose genome database from there and click "genome browser" >> button on the top blue bar, I can select any genomes without any errors. >> >> Regards, >> >> Tiandao >> >> >> On Mon, Jul 19, 2010 at 1:45 PM, Jennifer Jackson <[email protected] >> <mailto:[email protected]>> wrote: >> >> Hello Tiandao, >> >> This is the correct setup for these two tables. Another key table is >> dbDb (see step #11): >> >> http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database >> >> If you are still having problems after following the instructions, >> then it is hard to know the exact cause. Duplicating what you did >> before for other successfully loaded assemblies is recommended. >> >> Regards, >> >> >> Jen >> UCSC Genome Browser Support >> >> On 7/17/10 11:45 AM, Tiandao Li wrote: >> >> Here is the sample of defaultDb and genomeClade input. >> >> INSERT INTO defaultDb (genome, name) VALUES ("CCMV_NC_003521", >> "CCMV_NC_003521"); >> INSERT INTO genomeClade (genome, clade, priority) VALUES >> ("CCMV_NC_003521", "other", 7); >> >> >> >> On Fri, Jul 16, 2010 at 3:07 PM, Tiandao Li <[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> wrote: >> >> Yes. And so if I select Mammal again, it won't bring up >> Human. This >> is a human hg18 only genome browser. I checked dbDb, >> defaultDb, and >> genomeClade, no problem there for me. And I use the "add custom >> tracks" button, and direct me to another upload track page, >> I used >> clade there to select different genomes, no problem there. >> >> >> On Fri, Jul 16, 2010 at 2:53 PM, Jennifer Jackson >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> wrote: >> >> Hi Tiandao, >> >> This could be a set-up problem in hgcentral if you >> assigned one >> of your loaded databases to the clade "Other". Were the >> defaultDb and genomeClade tables modified as in step #12 >> of this >> help wiki? >> >> >> >> http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database >> >> Thank you, >> >> >> Jen >> UCSC Genome Browser Support >> >> On 7/16/10 10:24 AM, Tiandao Li wrote: >> >> Hi Jen, >> >> Finally I imported all genomes and annotation files >> into >> local genome >> browser. However, when select Other (clade), the >> page always >> show the >> error mesg. Would you please what caused this error, >> and how >> to fix it? >> Thanks! >> >> >> *Error(s):* >> >> * Error reading 5 bytes: Operation not permitted >> >> >> On Thu, Jul 15, 2010 at 12:04 AM, Jennifer Jackson >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> wrote: >> >> Hello Tiandao, >> >> Are you still having trouble with your mirror? I >> am not >> sure which >> problems were sorted out already and which you >> would >> still like help >> with. >> >> For your track below, have you tried setting the >> display >> to "pack" >> or "full" in the assembly browser display? To do >> this, >> use the pull >> down menu under the track name. >> >> More display help: >> >> >> http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#FineTuning >> >> File format help (including .wig): >> http://genome.ucsc.edu/FAQ/FAQformat.html >> >> Regarding the trackDb table - this is required. >> Lines in >> the table >> correspond to tracks in the assembly. >> >> >> Hopefully this helps, >> >> Jen >> UCSC Genome Browser Support >> >> On 7/14/10 9:29 AM, Tiandao Li wrote: >> >> Hi Jen, >> >> I figured out a way to import bed file into DB. >> Please look at >> the table >> below. >> >> *Sample Rows * >> >> >> >> bin chrom chromStart chromEnd >> name >> score >> strand >> 585 NC_003521 6664 7191 RL10 >> 1000 >> + >> 585 NC_003521 7202 7900 RL11 >> 1000 >> + >> 585 NC_003521 7939 9021 RL12 >> 1000 >> + >> 585 NC_003521 9123 10124 RL13 >> 1000 >> + >> 585 NC_003521 9123 10124 RL13 >> 1000 >> + >> 585 NC_003521 10256 10432 UL2 >> 1000 >> + >> 585 NC_003521 10504 11097 UL4 >> 1000 >> + >> 585 NC_003521 11469 11924 UL5 >> 1000 >> + >> 585 NC_003521 12130 12981 UL6 >> 1000 >> + >> 585 NC_003521 13052 13693 UL7 >> 1000 >> + >> >> >> The problem is I can't show the name next to >> the >> bar. Please help! >> >> On Wed, Jul 14, 2010 at 10:32 AM, Tiandao Li >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>> wrote: >> >> Hi Jen, >> >> I followed your advice, however, the >> converted >> wig file >> contains no >> annotated info, such as RL10 in the last >> column. >> >> Regarding gc5Base generation in building >> new >> genome, from >> the help >> manual, looks like it needs at least one >> trackDb >> to show the >> genome. >> Is there a way to check on the genome on >> browser >> without any >> trackDb, anyway, there are 3 default >> trackDbs >> there, Base >> Position, >> Short Match, and Restr Enzymes. >> >> Thanks, >> >> Tiandao >> >> >> On Tue, Jul 13, 2010 at 4:48 PM, >> Jennifer Jackson >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>> wrote: >> >> Hello Tiandao, >> >> Try these two modifications: >> 1) remove the track line from the file >> 2) leave off all arguments to the sort >> command (the >> numerical >> sort is not wanted) >> >> sort bedFile.bed | >> bedItemOverlapCount [options] >> <database> stdin >> >> A new assembly requires the six >> files listed >> in this >> help document: >> http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation >> >> It would be OK to skip step #10 in >> this help >> document: >> >> http://genomewiki.ucsc.edu/index.php/Building_a_new_genome_database >> >> Thanks, >> >> >> Jen >> UCSC Genome Browser Support >> >> On 7/13/10 12:19 PM, Tiandao Li wrote: >> >> Hi Jen, >> >> However, it still showed the >> wrong mesg. >> The file is tab >> separated. >> >> $ more ccmv.bed >> track color=125,0,0 >> NC_003521 6664 7191 RL10 >> NC_003521 7202 7900 RL11 >> NC_003521 7939 9021 RL12 >> NC_003521 9123 10124 RL13 >> NC_003521 9123 10124 RL13 >> NC_003521 10256 10432 UL2 >> NC_003521 10504 11097 UL4 >> NC_003521 11469 11924 UL5 >> NC_003521 12130 12981 UL6 >> NC_003521 13052 13693 UL7 >> NC_003521 13799 14305 UL8 >> >> $ sort -k1,1 -k2,2n ccmv.bed | >> /opt/kent/bedItemOverlapCount >> ccmv stdin >> Expecting 3 words line 12 of >> stdin got 2 >> >> And would you explain why need to >> generate gc5Base >> data and >> load table >> during building custom geome db? >> >> Thanks, >> >> Tiandao >> >> On Tue, Jul 13, 2010 at 1:55 PM, >> Jennifer Jackson >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>>> wrote: >> >> Hello Tiandao, >> >> Use the database name that you >> assigned to your >> reference genome >> when it was loaded. This is >> the same >> value as in >> "hgcentral.dbDb.name <http://hgcentral.dbDb.name> >> <http://hgcentral.dbDb.name> >> <http://hgcentral.dbDb.name> >> <http://hgcentral.dbDb.name> >> <http://hgcentral.dbDb.name>". >> >> >> Hopefully this helps, >> >> >> Jen >> UCSC Genome Browser Support >> >> On 7/13/10 8:33 AM, Tiandao >> Li wrote: >> >> Hi Jen, >> >> I have no problem to >> create and load >> trackDb. I want >> to use BED >> for our >> genome annotation. The >> following >> is my bed file. >> >> $ more ccmv.bed >> track name=CMV >> color=125,0,0 >> NC_003521 6664 >> 7191 RL10 >> NC_003521 7202 >> 7900 RL11 >> NC_003521 7939 >> 9021 RL12 >> NC_003521 9123 >> 10124 RL13 >> NC_003521 9123 >> 10124 RL13 >> NC_003521 10256 >> 10432 UL2 >> NC_003521 10504 >> 11097 UL4 >> NC_003521 11469 >> 11924 UL5 >> NC_003521 12130 >> 12981 UL6 >> NC_003521 13052 >> 13693 UL7 >> NC_003521 13799 >> 14305 UL8 >> NC_003521 14327 >> 14860 UL9 >> >> >> sort -k1,1 -k2,2n >> bedFile.bed \ >> | bedItemOverlapCount >> [options] >> <database> stdin \ >> | wigEncode stdin >> data.wig data.wib >> >> However, I didn't know >> which >> database I >> should input for >> bedItemOverlapCount. Or any >> alternative method >> directly convert >> bed to >> wig, which I knew how to >> upload. >> >> Thanks, >> >> Tiandao >> >> On Mon, Jul 12, 2010 at >> 11:02 >> PM, Jennifer >> Jackson >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>>>> wrote: >> >> Hello Tiandao, >> >> The README file I >> pointed >> you to has the >> instructions for >> creating a >> track. Did you have a >> question about a >> particular step? >> >> Or maybe the problem is >> related to track >> type? >> The RefSeq Genes >> track type is >> "genePred". It >> might be >> good to >> examine the >> current >> hg19 trackDb.ra file >> in the >> kent source >> tree to >> see how >> RefSeq Genes >> is set up there. >> >> Or maybe the problem is >> understanding the >> viewing options? A >> PSL, >> BED, and genePred >> track type >> all look a bit >> similar in the >> browser >> display. Dense mode >> will put >> all data on the >> same line. Both >> pack >> and full will >> display one >> line per >> table/file >> (where one line >> usually represents the >> alignment of a entire >> sequence). To >> see this, >> open the RefSeq Gene >> track >> in the >> browser and >> switch between the >> different display modes >> using the >> pull-down menu >> under the >> track name. >> >> Some display help: >> >> http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#FineTuning >> >> Hopefully this >> helps, but if >> not please >> let us know. >> >> Best regards, >> >> Jen >> UCSC Genome Browser >> Support >> >> On 7/12/10 8:40 AM, >> Tiandao >> Li wrote: >> >> Hi, >> >> I searched through >> genome and >> genome-mirror >> lists about >> how to add >> annotation info >> (such as >> CDS) to genome >> database on local >> mirror. Where >> can I find actual >> examples of >> trackDb.ra to load >> annotation info to >> local mirror? >> >> Thanks, >> >> Tiandao >> >> On Tue, Jul 6, >> 2010 at >> 4:38 PM, >> Jennifer Jackson >> <[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>>>>> wrote: >> >> Hi Tiandao, >> >> For genomes >> with >> annotation, the >> path >> would be: >> >> 1) load the >> reference genome >> sequence as >> you have done >> previously >> 2) layer in >> annotation as tracks >> mapped >> to the >> genome in #1 >> >> This README >> in the >> kent source >> tree has >> the details >> for #2 >> >> kent/src/product/README.trackDb >> >> I hope this >> pointer >> is useful, but >> please let us >> know if you >> need >> more help. >> >> For next >> time, it >> would nice for >> us if >> you sent your >> question >> through one our >> mailing lists. This >> question would >> be a good >> fit for >> the >> [email protected] <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>>>> >> >> list. Doing >> this >> would help us >> to get >> you a speedy >> answer >> and also >> help other >> users >> that are >> reviewing the >> Q & A on the >> public >> posting. >> If you need >> private >> (not posted) >> communications, the >> list >> [email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected] >> >>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected] >> >>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected] >> >>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected] >> >>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected] >> >>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected] >> >>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>>>> would be an >> >> alternative >> as it is >> internal to the >> UCSC Browser >> team only. >> >> Best regards, >> Jen >> >> UCSC Genome >> Browser >> Support >> http://genome.ucsc.edu/contacts.html >> [email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>>> >> <mailto:[email protected] <mailto:[email protected]> 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<mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>> >> <mailto:[email protected] <mailto:[email protected]> >> <mailto:[email protected] <mailto:[email protected]>>>>>>> >> >> [email protected] <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>> >> <mailto:[email protected] >> <mailto:[email protected]> >> <mailto:[email protected] >> <mailto:[email protected]>>>>>>> >> >> >> >> On 7/6/10 >> 1:00 PM, >> Tiandao Li wrote: >> >> Hi Jen, >> >> We have >> several >> annotated >> genomes of >> viruses >> download >> from NCBI and >> other DB >> serves. >> Now I want to >> import them with >> annotation into our >> local >> genome >> browser. Would you >> please point me >> to the >> details >> of how to >> do it? I >> import some >> sequences without >> annotation to our >> browser >> before. >> >> Thanks, >> >> Tiandao >> >> >> >> >> >> >> >> >> >> >> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
