That file is not really the actual data. It is merely a summary of the underlying data. If you have the kent source tree, you can query this table via the public MySQL server: http://genomewiki.ucsc.edu/index.php/Using_hgWiggle_without_a_database
Or, you can generate your own window size GC contents measurements with the kent source tree program: hgGcPercent Or, you can load a custom track of the regions of interest and have the table browser emit the data values for those regions. --Hiram ----- Original Message ----- From: "Yiwen Chen" <[email protected]> To: [email protected] Sent: Monday, July 19, 2010 8:10:43 PM GMT -08:00 US/Canada Pacific Subject: [Genome] Question about gc5Base.txt Dear all, I am trying to calculate gc content of a given set of genomic regions using gc5Base.txt with dm3. I was wondering where I can find the documentation on what each field represents in the gc5Base.txt. Thank you very much. Sincerely, Yiwen Chen _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
