Hi Xin, My best guess is that track line isn't configured quite right. Did you include 'type=bigBed' in your track line? Also, to see color in the squish, pack and full modes you will need to include 'itemRgb="On" ' in the track line as well. Another possibility is that your 9 fields don't line up with those specified in bedExample2.as. Have you looked at this file and verified that it matches your fields?
I hope this helps you solve your problem. If none of these solutions work, please reply with the track and browser lines that you used to upload your custom track. Thank you, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/21/10 10:59 AM, Xin Zhou wrote: > Hi all, > > > I converted bed 9 format file into bigBed using following command: > > $ bedToBigBed -as=bedExample2.as -bedFields=9 in_file chr_size out_file > > And made the bigBed file visible on browser. The problem is, the bed 9 > effects are missing (strand, coloring), and view options only include > "full", "dense", "hide". > > Is it possible to tweak it so to get bed 9 effect from bigBed track? > > > Thanks! > > > Xin Zhou > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
