Hello Janahan, For you dataset, the best option is to create a custom track, load it into the mouse browser, where you can visualize the data and compare it to existing annotation using the Table browser.
Custom track help (see the datatype = microarray): http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks Table browser help: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser The mouse browser, July 2007 (NCBI37/mm9), contains three CGH arrays in the track Expression and Regulation -> Agilent CGH. You may find it useful to review these to understand how similar data is included in the native track set. Please feel free to contact the mailing list support team again if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 7/26/10 3:20 PM, Gnanachandran, Janahan wrote: > Hi, > > > > I have few Nimblegen mouse 385K aCGH array data(.pair format) and trying > to get annotations for that to view in genome browser. How can I analyse > it using your browser? Do have an annotation file for it? > > Or is there anyways I can get annotations? > > > > Is there anyways I can create custom annotations using the file itself > and the ucsc genome browser mouse cytoband files? > > > > Thank you, > > > > > > Regards, > > Janahan Gnanachandran, M.S. > > Bioinformatics Analyst > > Children's Center for Cancer and Blood Diseases > > Childrens Hospital Los angeles > > > > > > > ------------------------------------------------------------------------------ > CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, > is for the sole use of the intended recipient(s) and may contain confidential > or legally privileged information. Any unauthorized review, use, disclosure > or distribution is prohibited. If you are not the intended recipient, please > contact the sender by reply e-mail and destroy all copies of this original > message. > ============================================================================== > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
